We introduce and analyze a hybridizable discontinuous Galerkin (HDG) method for the dual-porosity-Stokes problem. This coupled problem describes the interaction between free flow in macrofractures/conduits, governed by the Stokes equations, and flow in microfractures/matrix, governed by a dual-porosity model. We prove that the HDG method is strongly conservative, well-posed, and give an a priori error analysis showing dependence on the problem parameters. Our theoretical findings are corroborated by numerical examples

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