Long document question answering systems typically process texts as flat sequences or use arbitrary segmentation, failing to capture discourse structures that guide human comprehension. We present a discourse-aware hierarchical framework that leverages rhetorical structure theory (RST) to enhance long document question answering. Our approach converts discourse trees into sentence-level representations and employs LLM-enhanced node representations to bridge structural and semantic information. The framework involves three key innovations: specialized discourse parsing for lengthy documents, LLM-based enhancement of discourse relation nodes, and structure-guided hierarchical retrieval. Comprehensive experiments on QASPER, QuALITY, and NarrativeQA demonstrate consistent improvements over existing approaches. Ablation studies confirm that incorporating discourse structure significantly enhances question answering across diverse document types.

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