If the Stokes equations are properly discretized, it is well-known that the Schur complement matrix is spectrally equivalent to the identity matrix. Moreover, in the case of simple geometries, it is often observed that most of its eigenvalues are equal to one. These facts form the basis for the famous Uzawa and Krylov-Uzawa algorithms. However, in the case of complex geometries, the Schur complement matrix can become arbitrarily ill-conditioned having a significant portion of non-unit eigenvalues, which makes the established Uzawa preconditioner inefficient. In this article, we study the Schur complement formulation for the staggered finite-difference discretization of the Stokes problem in 3D CT images and synthetic 2D geometries. We numerically investigate the performance of the CG iterative method with the Uzawa and SIMPLE preconditioners and draw several conclusions. First, we show that in the case of low porosity, CG with the SIMPLE preconditioner converges faster to the discrete pressure and provides a more accurate calculation of sample permeability. Second, we show that an increase in the surface-to-volume ratio leads to an increase in the condition number of the Schur complement matrix, while the dependence is inverse for the Schur complement matrix preconditioned with the SIMPLE. As an explanation, we conjecture that the no-slip boundary conditions are the reason for non-unit eigenvalues of the Schur complement.

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