Quantum computing is in an era defined by rapidly evolving quantum hardware technologies, combined with persisting high gate error rates, large amounts of noise, and short coherence times. Overcoming these limitations requires systems-level approaches that account for the strengths and weaknesses of the underlying hardware technology. Yet few hardware-aware compiler techniques exist for neutral atom devices, with no prior work on compiling to the neutral atom native gate set. In particular, current neutral atom hardware does not support certain single-qubit rotations via local addressing, which often requires the circuit to be decomposed into a large number of gates, leading to long circuit durations and low overall fidelities. We propose the first compiler designed to overcome the challenges of limited local addressibility in neutral atom quantum computers. We present algorithms to decompose circuits into the neutral atom native gate set, with emphasis on optimizing total pulse area of global gates, which dominate gate execution costs in several current architectures. Furthermore, we explore atom movement as an alternative to expensive gate decompositions, gaining immense speedup with routing, which remains a huge overhead for many quantum circuits. Our decomposition optimizations result in up to ~3.5x and ~2.9x speedup in time spent executing global gates and time spent executing single-qubit gates, respectively. When combined with our atom movement routing algorithms, our compiler achieves up to ~10x reduction in circuit duration, with over ~2x improvement in fidelity. We show that our compiler strategies can be adapted for a variety of hardware-level parameters as neutral atom technology continues to develop.

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