Research involving diverse but related data sets, where associations between covariates and outcomes may vary, is prevalent in various fields including agronomic studies. In these scenarios, hierarchical models, also known as multilevel models, are frequently employed to assimilate information from different data sets while accommodating their distinct characteristics. However, their structure extend beyond simple heterogeneity, as variables often form complex networks of causal relationships. Bayesian networks (BNs) provide a powerful framework for modelling such relationships using directed acyclic graphs to illustrate the connections between variables. This study introduces a novel approach that integrates random effects into BN learning. Rooted in linear mixed-effects models, this approach is particularly well-suited for handling hierarchical data. Results from a real-world agronomic trial suggest that employing this approach enhances structural learning, leading to the discovery of new connections and the improvement of improved model specification. Furthermore, we observe a reduction in prediction errors from 28\% to 17\%. By extending the applicability of BNs to complex data set structures, this approach contributes to the effective utilisation of BNs for hierarchical agronomic data. This, in turn, enhances their value as decision-support tools in the field.

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