In this paper, channel estimation problem for extremely large-scale multi-input multi-output (XL-MIMO) systems is investigated with the considerations of the spherical wavefront effect and the spatially non-stationary (SnS) property. Due to the diversities of SnS characteristics among different propagation paths, the concurrent channel estimation of multiple paths becomes intractable. To address this challenge, we propose a two-phase channel estimation scheme. In the first phase, the angles of departure (AoDs) on the user side are estimated, and a carefully designed pilot transmission scheme enables the decomposition of the received signal from different paths. In the second phase, the subchannel estimation corresponding to different paths is formulated as a three-layer Bayesian inference problem. Specifically, the first layer captures block sparsity in the angular domain, the second layer promotes SnS property in the antenna domain, and the third layer decouples the subchannels from the observed signals. To efficiently facilitate Bayesian inference, we propose a novel three-layer generalized approximate message passing (TL-GAMP) algorithm based on structured variational massage passing and belief propagation rules. Simulation results validate the convergence and effectiveness of the proposed algorithm, showcasing its robustness to different channel scenarios.

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