AI-driven software development has rapidly advanced with the emergence of software development agents that leverage large language models (LLMs) to tackle complex, repository-level software engineering tasks. These agents go beyond just generation of final code; they engage in multi-step reasoning, utilize various tools for code modification and debugging, and interact with execution environments to diagnose and iteratively resolve issues. However, most existing evaluations focus primarily on static analyses of final code outputs, yielding limited insights into the agents' dynamic problem-solving processes. To fill this gap, we conduct an in-depth empirical study on 3,977 solving-phase trajectories and 3,931 testing-phase logs from 8 top-ranked agents evaluated on 500 GitHub issues in the SWE-Bench benchmark. Our exploratory analysis shows that Python execution errors during the issue resolution phase correlate with lower resolution rates and increased reasoning overheads. We have identified the most prevalent errors -- such as ModuleNotFoundError and TypeError -- and highlighted particularly challenging errors like OSError and database-related issues (e.g., IntegrityError) that demand significantly more debugging effort. Furthermore, we have discovered 3 bugs in the SWE-Bench platform that affect benchmark fairness and accuracy; these issues have been reported to and confirmed by the maintainers. To promote transparency and foster future research, we publicly share our datasets and analysis scripts.

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