For a skew polynomial ring $R=A[X;\theta,\delta]$ where $A$ is a commutative frobenius ring, $\theta$ an endomorphism of $A$ and $\delta$ a $\theta$-derivation of $A$, we consider cyclic left module codes $\mathcal{C}=Rg/Rf\subset R/Rf$ where $g$ is a left and right divisor of $f$ in $R$. In this paper we derive a parity check matrix when $A$ is a finite commutative frobenius ring using only the framework of skew polynomial rings. We consider rings $A=B[a_1,\ldots,a_s]$ which are free $B$-algebras where the restriction of $\delta$ and $\theta$ to $B$ are polynomial maps. If a Gr\"obner basis can be computed over $B$, then we show that all Euclidean and Hermitian dual-containing codes $\mathcal{C}=Rg/Rf\subset R/Rf$ can be computed using a Gr\"obner basis. We also give an algorithm to test if the dual code is again a cyclic left module code. We illustrate our approach for rings of order $4$ with non-trivial endomorphism and the Galois ring of characteristic $4$.

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