This paper studies the extreme singular values of non-harmonic Fourier matrices. Such a matrix of size $m\times s$ can be written as $\Phi=[ e^{-2\pi i j x_k}]_{j=0,1,\dots,m-1, k=1,2,\dots,s}$ for some set $\mathcal{X}=\{x_k\}_{k=1}^s$. The main results provide explicit lower bounds for the smallest singular value of $\Phi$ under the assumption $m\geq 6s$ and without any restrictions on $\mathcal{X}$. They show that for an appropriate scale $\tau$ determined by a density criteria, interactions between elements in $\mathcal{X}$ at scales smaller than $\tau$ are most significant and depends on the multiscale structure of $\mathcal{X}$ at fine scales, while distances larger than $\tau$ are less important and only depend on the local sparsity of the far away points. Theoretical and numerical comparisons show that the main results significantly improve upon classical bounds and achieve the same rate that was previously discovered for more restrictive settings.

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